http://www.democracynow.org/article.pl?sid=04/04/28/1449257...As ambassador to Honduras from 1981 to 1985, Negroponte played a key role in US aid to the Contra death squads in Nicaragua and shoring up the brutal military dictatorship of General Gustavo Alvarez Martínez in Honduras. Between 1980 and 1994 U.S. military aid to Honduras jumped from $3.9 million to $77.4 million. Much of this went to ensure the Honduran army's loyalty in the battle against popular movements throughout Central America. <1> (
http://www.democracynow.org/article.pl?sid=04/04/20/1411203)
"The high-level planning, money and arms for those wars flowed from Washington, but much of the on-the-ground logistics for the deployment of intelligence, arms and soldiers was run out of Honduras … So crammed was the tiny country with U.S. bases and weapons that it was dubbed the USS Honduras, as if it were simply an off-shore staging ground. The captain of this ship, Negroponte was in charge of the U.S. Embassy when, according to a 1995 four-part series in the Baltimore Sun, hundreds of Hondurans were kidnapped, tortured and killed by Battalion 316, a secret army intelligence unit trained and supported by the Central Intelligence Agency," Allen wrote. <2> (
http://www.inthesetimes.com/issue/25/09/allen2509.html)
According to the New York Times, Negroponte was responsible for "carrying out the covert strategy of the Reagan administration to crush the Sandinistas government in Nicaragua." Critics say that during his ambassadorship, human rights violations in Honduras became systematic.
Negroponte supervised the creation in 1984 of the El Aguacate air base, where the US trained Nicaraguan Contras and which critics say was used as a secret detention and torture center during the 1980s. <3> (
http://www.rtfcam.org/report/volume_19/No_4/article4.htm)
In August 2001, excavations at the base discovered 185 corpses, including two Americans, who are thought to have been killed and buried at the site. <4> (
http://sundial.ccs.yorku.ca/cgi-bin/wa?A2=ind0109&L=lacyork&F=&S=&P=1063)
Records also show that a special intelligence unit of the Honduran armed forces, Battalion 3-16, trained by the CIA and Argentine military, kidnapped, tortured and killed hundreds of people, including US missionaries. Critics charge that Negroponte knew about these human rights violations and yet continued to collaborate with the Honduran military while lying to Congress.
In May 1982, a nun, Sister Laetitia Bordes, who had worked for ten years in El Salvador, went on a fact-finding delegation to Honduras to investigate the whereabouts of thirty Salvadoran nuns and women of faith who fled to Honduras in 1981 after Archbishop Oscar Romero's assassination. Negroponte claimed the embassy knew nothing.
But in a 1996 interview with the Baltimore Sun, Binns, said that a group of Salvadorans, among whom were the women Bordes had been looking for, were captured on April 22, 1981, and savagely tortured by the DNI, the Honduran Secret Police, and then later thrown out of helicopters alive.
In early 1984, two American mercenaries, Thomas Posey and Dana Parker, contacted Negroponte, stating they wanted to supply arms to the Contras after the U.S. Congress had banned further military aid. Documents show that Negroponte brought the two with a contact in the Honduran armed forces.
The operation was exposed nine months later, at which point the Reagan administration denied any US involvement, despite Negroponte's participation in the scheme. Other documents uncovered a plan of Negroponte and then-Vice President George H.W. Bush to funnel Contra aid money through the Honduran government...
http://www.sourcewatch.org/index.php?title=John_D._Negroponte's_track_record_in_Central_America