the way I understand it, an S-corp is a pass-through entity, meaning any money the corporation makes is considered to be your personal income, accounted for on your personal income tax return. The corporation itself doesn't pay any income tax as any income is considered to be your income. I believe you file a form 1120-S annually on behalf of the corporation, and the corporation should issue you a form K-1 (Shareholder's Share of Income, Credits, Deductions, etc.) to report the income to you. (The 1120S will calculate how much is reported on form K1.)
(edited to clarify how I think you're supposed to go about paying yourself:)
I'm not 100% sure about this, so definitely research it more and maybe pay for a consultation with an accountant, but I think you just take a draw when you need to (as with a sole proprietorship) and then pay quarterly estimated taxes and pay the self-employment tax on your annual tax return. You can also pay yourself dividends in addition to salary if you're doing well, but if your salary is low and you're paying yourself dividends, that's asking for an audit because the IRS tends to consider that as evasion of self-employment tax.
Oh, hey, look, I found a chart of what you're supposed to do:
http://www.irs.gov/businesses/small/article/0,,id%3D98263,00.htmlAlso--S Corp frequently asked questions:
http://www.irs.gov/faqs/faq-kw157.htmlSearching at the IRS web site is nearly pointless. A good trick is to go to google, type site:irs.gov and then your keywords in the search box. Google seems to do a much better job of indexing the IRS site than the IRS itself does.
The book "Tax Savvy for Small Business" by Frederick W. Daily (put out by Nolo Press) is a good one.
Hope that helps!