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I'll answer them one by one:
1) Odor -- as long as you are reasonably conscientious about keeping it cleaned out, you won't have an odor issue. "Reasonably" is going to vary a bit on the method you use. If you are going to have a fixed in location coop, instead of a mobile "chicken tractor" the best method to keep things clean is the "deep litter" method -- in other words, put down about a foot of straw, pine shavings, or similar type of bedding. As the chickens make droppings, it will get stirred under by their scratching and will be broken down with the bedding by natural processes. The main thing I have found to keep the odor down is KEEP IT DRY. If the bedding gets wet, then you have odor issues. So, put some kind of rain shield on top of the coop. I made mine as little hoophouse greenhouses on top, covered with greenhouse plastic in winter. In summer, I throw camo colored tarps on top to keep the hot sun out. The sides are open to the air for ventilation. Seems to work just fine. I wouldn't have any qualms about putting a chicken coop within 8 or 10 feet of my house, but that's me. It doesn't smell nearly as much, IMO, as my garbage cans often do in the summer time, and THOSE I keep out behind the detached garage with chlorine tablets and mothballs to keep down the smells/insects, NOT near the house.
Now, if you don't use the "deep litter" method, you obviously will need to clean a lot more often. Maybe even daily if you just have bare gravel or dirt for the floor (not advised, IMO).
Oh, and my litter of choice -- oak leaves. I gather bags of them in fall and again in the early spring (from the lazy people who didn't rake in the fall). I've found they make the BEST bedding -- not only free, but they take a long time to break down and really keep the odor down, much better than straw does, IMO, probably because they are very acidic and the tannins in them control bacterial growth. Pine chips/shavings are also really good at keeping the odor down.
2) With the deep litter method, you clean it out every roughly month to month and a half, and top dress once or twice in between with some fresh bedding. When I clean mine out, because the ratio of carbon-containing plant matter to manure is high even after 4, 6, or even 8 weeks, I just use it directly on flower beds, around trees and shrubs, and I've never had it burn anything. The "poop board" idea is good, too, it concentrates many, but not all by any means, of the droppings in one place. This, of course, you will need to clean all of the time, I use a hoe to scrape it off into a bucket with pine shavings, and out to the compost it goes.
3) They want to sleep on roosts. I used to lock mine in at night into the insulated box I made, but they didn't like it, and are much happier just roosting in the "rafters" of the coop. For roosts, I just put in a couple of boards of different widths. They seem to like to use the 2x4, laid so the wide side is horizontal. I guess it's the most comfortable for them.
4) Nesting boxes -- yes, should be dark. But, you should have a top or side that opens so that there is enough light in there to see the eggs. Mine isn't anything fancy, just a wooden box I made from scrap lumber - it's about 30 x 30 inches on the outside, so about 24 x 24 inside. I put thick foamboard between the walls, to help insulate in the winter, since eggs can freeze during the coldest weather here in a few hours. I put a small door hole, about 8 x 8 inches, on one side on the front corner. I had put a piece of burlap over it for a flap, but they tried eating that so I took it off. I only made the one box, and they all use it without any issues. Obviously, my box isn't pitch dark by any means with the door hole on the front. But, they like it.
I don't let any of my birds "free range" because it wouldn't be safe. I live on the corner of a subdivision type street and main road with heavy traffic, and have no fences, AND we have a lot of predators, especially one redtail hawk who LOVES to sit and watch my birds through their pens. So, they have to live caged lives. I don't think they mind, since they've always been in coops/pens.
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